getSupercell.cpp File Reference

Include dependency graph for getSupercell.cpp:

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Functions
template<typename T >
T	getDet (T *mat)
void	getSupercell (double *prim, int *tile, double *super)
template<typename T >
T	dot (T *a, T *b)
template<typename T >
void	cross (T *a, T *b, T *c)
double	SimCellRad (double *mat)
double	getScore (double *mat)
double	WigSeitzRad (double *mat)
void	getBestTile (double *primcell, int target, int *tilemat, double &radius, int range=7)
int	main (int argc, char *argv[])

Function Documentation

cross()

void cross	(	T *	a,
		T *	b,
		T *	c
	)

Definition at line 52 of file getSupercell.cpp.

Referenced by SimCellRad().

{
  c[0] = a[1] * b[2] - a[2] * b[1];
  c[1] = -a[0] * b[2] + a[2] * b[0];
  c[2] = a[0] * b[1] - a[1] * b[0];
}

dot()

T dot	(	T *	a,
		T *	b
	)

Definition at line 46 of file getSupercell.cpp.

Referenced by SimCellRad().

{
  return a[0] * b[0] + a[1] * b[1] + a[2] * b[2];
}

getBestTile()

void getBestTile	(	double *	primcell,
		int	target,
		int *	tilemat,
		double &	radius,
		int	range = 7
	)

Definition at line 136 of file getSupercell.cpp.

References getDet(), getScore(), getSupercell(), qmcplusplus::Units::distance::m, qmcplusplus::n, and SimCellRad().

Referenced by main().

{
  double largest          = 0.0;
  double bestScore        = 0.0;
  static const double tol = 0.0000001;
  double detPrim          = getDet(primcell);
  if (detPrim < 0)
  {
    target *= -1;
  }
#pragma omp parallel
  {
    double my_largest = 0.0;
    int my_besttile[9];
    double localBestScore = 0.0;
#pragma omp for
    for (int i = -range; i <= range; i++)
    {
      int d[9];
      double super[9];
      d[0] = i;
      for (int j = -range; j <= range; j++)
      {
        d[1] = j;
        for (int k = -range; k <= range; k++)
        {
          d[2] = k;
          for (int l = -range; l <= range; l++)
          {
            d[3] = l;
            for (int m = -range; m <= range; m++)
            {
              d[4]            = m;
              int denominator = j * l - i * m;
              for (int n = -range; n <= range; n++)
              {
                d[5]    = n;
                int fpp = k * l - i * n;
                for (int o = -range; o <= range; o++)
                {
                  d[6]   = o;
                  int sp = o * (n * j - k * m);
                  for (int p = -range; p <= range; p++)
                  {
                    d[7]        = p;
                    int numpart = p * fpp + sp;
                    if (denominator != 0)
                    {
                      int rem = 5;
                      rem     = (numpart - target) % denominator;
                      if (rem == 0)
                      {
                        d[8] = (numpart - target) / denominator;
                        getSupercell(primcell, d, super);
                        double score = getScore(super);
                        double rad   = SimCellRad(super);
                        //double rad = WigSeitzRad(super);
                        if (rad > my_largest + tol || (rad > my_largest - tol && score > localBestScore))
                        {
                          my_largest     = rad;
                          localBestScore = score;
                          std::memcpy(my_besttile, d, 9 * sizeof(int));
                        }
                      }
                    }
                    else
                    // Handle case where denominator is 0
                    {
                      if (numpart == target)
                      {
                        //      cout << "Got here" << std::endl;
                        for (int q = -range; q <= range; q++)
                        {
                          d[8] = q;
                          getSupercell(primcell, d, super);
                          double score = getScore(super);
                          double rad   = SimCellRad(super);
                          //double rad = WigSeitzRad(super);
                          if (rad > my_largest + tol || (rad > my_largest - tol && score > localBestScore))
                          {
                            my_largest     = rad;
                            localBestScore = score;
                            std::memcpy(my_besttile, d, 9 * sizeof(int));
                          }
                        }
                      }
                    }
                  }
                }
              }
            }
          }
        }
      }
    }
    if (my_largest > largest + tol || (my_largest > largest - tol && localBestScore > bestScore))
    {
#pragma omp critical
      {
        if (my_largest > largest + tol || (my_largest > largest - tol && localBestScore > bestScore))
        {
          largest   = my_largest;
          bestScore = localBestScore;
          std::memcpy(tilemat, my_besttile, 9 * sizeof(int));
        }
      }
    }
  }
  radius = largest;
}

getDet()

T getDet

(

T *

mat

)

Definition at line 26 of file getSupercell.cpp.

Referenced by getBestTile().

{
  return mat[0] * (mat[4] * mat[8] - mat[7] * mat[5]) - mat[1] * (mat[3] * mat[8] - mat[5] * mat[6]) +
      mat[2] * (mat[3] * mat[7] - mat[4] * mat[6]);
}

getScore()

double getScore

(

double *

mat

)

Definition at line 85 of file getSupercell.cpp.

References qmcplusplus::abs().

Referenced by getBestTile(), and main().

{
  double score            = 0;
  static const double tol = 0.001;
  // Highest preference for diagonal matrices
  const double abssumoffidag =
      std::abs(mat[1]) + std::abs(mat[2]) + std::abs(mat[3]) + std::abs(mat[5]) + std::abs(mat[6]) + std::abs(mat[7]);
  if (abssumoffidag < tol)
  {
    //    std::cout << "Found a diagonal supercell!" << std::endl;
    score += 50000;
  }
  // Now prefer positive elements that come as early as possible
  for (int i = 0; i < 9; i++)
  {
    if (mat[i] > 0.0)
    {
      score += 10;
      double v = (9.0 - static_cast<double>(i)) * 0.1;
      score += v * v;
    }
  }
  return score;
}

getSupercell()

void getSupercell	(	double *	prim,
		int *	tile,
		double *	super
	)

Definition at line 32 of file getSupercell.cpp.

Referenced by getBestTile(), and main().

{
  super[0] = tile[0] * prim[0] + tile[1] * prim[3] + tile[2] * prim[6];
  super[1] = tile[0] * prim[1] + tile[1] * prim[4] + tile[2] * prim[7];
  super[2] = tile[0] * prim[2] + tile[1] * prim[5] + tile[2] * prim[8];
  super[3] = tile[3] * prim[0] + tile[4] * prim[3] + tile[5] * prim[6];
  super[4] = tile[3] * prim[1] + tile[4] * prim[4] + tile[5] * prim[7];
  super[5] = tile[3] * prim[2] + tile[4] * prim[5] + tile[5] * prim[8];
  super[6] = tile[6] * prim[0] + tile[7] * prim[3] + tile[8] * prim[6];
  super[7] = tile[6] * prim[1] + tile[7] * prim[4] + tile[8] * prim[7];
  super[8] = tile[6] * prim[2] + tile[7] * prim[5] + tile[8] * prim[8];
}

main()

int main	(	int	argc,
		char *	argv[]
	)

Definition at line 248 of file getSupercell.cpp.

References getBestTile(), getScore(), getSupercell(), and SimCellRad().

{
  double prim[9];
  int target = 0;
  char* pend;
  int verbose  = 0;
  int maxentry = 4;
  for (int i = 1; i < argc; i++)
  {
    if (i <= argc)
    {
      if (!std::strcmp(argv[i], "--ptvs"))
      {
        for (int j = 0; j < 9; j++)
        {
          prim[j] = strtod(argv[i + j + 1], &pend);
        }
        i += 9;
      }
      if (!std::strcmp(argv[i], "--target"))
      {
        target = strtol(argv[i + 1], &pend, 10);
        i++;
      }
      if (!std::strcmp(argv[i], "--verbose"))
      {
        verbose = 1;
      }
      if (!std::strcmp(argv[i], "--maxentry"))
      {
        maxentry = strtol(argv[i + 1], &pend, 10);
        i++;
      }
    }
  }

  int besttile[9];
  double super[9];
  double radius;
  getBestTile(prim, target, besttile, radius, maxentry);
  getSupercell(prim, besttile, super);
  if (verbose)
  {
    std::cout << "Best Tiling Matrix = " << std::endl;
    for (int i = 0; i < 3; i++)
    {
      for (int j = 0; j < 3; j++)
      {
        std::cout << besttile[i * 3 + j] << "   ";
      }
      std::cout << std::endl;
    }
    std::cout << "Best Supercell = " << std::endl;
    for (int i = 0; i < 3; i++)
    {
      for (int j = 0; j < 3; j++)
      {
        std::cout << super[i * 3 + j] << "   ";
      }
      std::cout << std::endl;
    }
    std::cout << "radius = " << radius << std::endl;
    double score = getScore(super);
    std::cout << "score = " << score << std::endl;
    int trialtile[9];
    trialtile[0] = -1;
    trialtile[1] = 3;
    trialtile[2] = -1;
    trialtile[3] = -3;
    trialtile[4] = 1;
    trialtile[5] = 1;
    trialtile[6] = 1;
    trialtile[7] = 1;
    trialtile[8] = 1;
    double ts[9];
    getSupercell(prim, trialtile, ts);
    std::cout << "Trial Supercell = " << std::endl;
    for (int i = 0; i < 3; i++)
    {
      for (int j = 0; j < 3; j++)
      {
        std::cout << ts[i * 3 + j] << "   ";
      }
      std::cout << std::endl;
    }
    std::cout << "radius = " << SimCellRad(ts) << std::endl;
    score = getScore(ts);
    std::cout << "score = " << score << std::endl;
  }
  else
  {
    std::cout << radius << "   ";
    for (int i = 0; i < 9; i++)
    {
      std::cout << besttile[i] << "   ";
    }
    for (int i = 0; i < 9; i++)
    {
      std::cout << super[i] << "   ";
    }
    std::cout << std::endl;
  }
}

SimCellRad()

double SimCellRad

(

double *

mat

)

Definition at line 59 of file getSupercell.cpp.

References qmcplusplus::Units::distance::A, qmcplusplus::abs(), B(), qmcplusplus::Units::charge::C, cross(), dot(), and qmcplusplus::sqrt().

Referenced by getBestTile(), and main().

{
  double A[3];
  double B[3];
  double C[3];
  double BxC[3];
  double radius = 5000000000000000.0;
  for (int i = 0; i < 3; i++)
  {
    const int astart = i * 3;
    const int bstart = ((i + 1) % 3) * 3;
    const int cstart = ((i + 2) % 3) * 3;
    for (int j = 0; j < 3; j++)
    {
      A[j] = mat[astart + j];
      B[j] = mat[bstart + j];
      C[j] = mat[cstart + j];
    }
    cross(B, C, BxC);
    double val = std::abs(0.5 * dot(A, BxC) / sqrt(dot(BxC, BxC)));
    if (val < radius)
      radius = val;
  }
  return radius;
}

WigSeitzRad()

double WigSeitzRad

(

double *

mat

)

Definition at line 110 of file getSupercell.cpp.

References qmcplusplus::sqrt().

{
  double rmin = 1000000000000000;
  for (int i = -1; i <= 1; i++)
  {
    for (int j = -1; j <= 1; j++)
    {
      for (int k = -1; k <= 1; k++)
      {
        if ((i != 0) || (j != 0) || (k != 0))
        {
          double d[3];
          d[0]        = i * mat[0] + j * mat[3] + k * mat[6];
          d[1]        = i * mat[1] + j * mat[4] + k * mat[7];
          d[2]        = i * mat[2] + j * mat[5] + k * mat[8];
          double dist = 0.5 * sqrt(d[0] * d[0] + d[1] * d[1] + d[2] * d[2]);
          if (dist < rmin)
            rmin = dist;
        }
      }
    }
  }
  return rmin;
}